Scientific Publications 2021

Jahr Year	Titel/Autor:in Title/Author	Publikationstyp Publication Type
2021	Virtual Connectomic Datasets in Alzheimer's Disease and Aging Using Whole-Brain Network Dynamics Modelling Arbabyazd, L.; Shen, K.; Wang, Z.; Hofmann-Apitius, Martin; Ritter, P.; McIntosh, A.R.; Battaglia, D.; Jirsa, V.	Zeitschriftenaufsatz Journal Article
2021	Smart Automatic Configurator for Fast and Robust Fluid Structure Interaction Co-Simulations Arjmandi, Hamid; Padmanabhan, Deepan	Konferenzbeitrag Conference Paper
2021	Multimodal Transformers for Biomedical Text and Knowledge Graph Data Balabin, Helena	Master Thesis
2021	AdvWarp: A Transformation Algorithm for Advanced Modeling of Gas Compressors and Drives Baldin, Anton; Cassirer, K.; Clees, Tanja; Klaassen, B.; Nikitin, I.; Nikitina, L.; Pott, S.	Konferenzbeitrag Conference Paper
2021	Untersuchung eines Power-to-Gas Simulationsmodells auf Stabilität und Geschwindigkeit Bareeev-Rudy, Michael	Master Thesis
2021	Rapid Prescreening of Organic Compounds for Redox Flow Batteries: A Graph Convolutional Network for Predicting Reaction Enthalpies from SMILES Barker, James; Berg, Laura-Sophie; Hamaekers, Jan; Maass, Astrid	Zeitschriftenaufsatz Journal Article
2021	Reaction behavior modeling of metal hydride based on FeTiMn using numerical simulations Bedrunka, Mario Christopher; Bornemann, Nils; Steinebach, Gerd; Reith, Dirk	Paper
2021	Lettuce: PyTorch-Based Lattice Boltzmann Framework Bedrunka, Mario Christopher; Wilde, Dominik; Kliemank, Martin; Reith, Dirk; Foysi, Holger; Krämer, Andreas	Konferenzbeitrag Conference Paper
2021	CLEP: A hybrid data- and knowledge-driven framework for generating patient representations Bharadhwaj, Vinay Srinivas; Ali, Mehdi; Birkenbihl, Colin; Mubeen, Sarah; Lehmann, Jens; Hofmann-Apitius, Martin; Hoyt, Charles Tapley; Domingo-Fernández, Daniel	Zeitschriftenaufsatz Journal Article
2021	ANMerge: A Comprehensive and Accessible Alzheimer's Disease Patient-Level Dataset Birkenbihl, Colin; Westwood, Sarah; Shi, Liu; Nevado-Holgado, Alejo; Westman, Eric; Lovestone, Simon; Hofmann-Apitius, Martin	Zeitschriftenaufsatz Journal Article
2021	Similarity of particle systems using an invariant root mean square deviation measure Bulin, Johannes; Hamaekers, Jan	Paper
2021	Predictive analytics in quality assurance for assembly processes: lessons learned from a case study at an industry 4.0 demonstration cell Burggräf, Peter; Wagner, Johannes; Heinbach, Benjamin; Steimnberg, Fabian; Pèrez M., Alejandro R.; Schmallenbach, Lennart; Garcke, Jochen; Steffes-lai, Daniela; Wolter, Moritz	Zeitschriftenaufsatz Journal Article
2021	Predictive analytics in quality assurance for assembly processes: Lessons learned from a case study at an industry 4.0 demonstration cell Burggräf, Peter; Wagner, Johannes; Heinbach, Benjamin; Steinberg, Fabian; Pérez M., Alejandro R.; Schmallenbach, Lennart; Garcke, Jochen; Steffes-lai, Daniela; Wolter, Moritz	Zeitschriftenaufsatz Journal Article
2021	MathEnergy - Mathematical Key Technologies for Evolving Energy Grids Clees, Tanja; Baldin, Anton; Benner, Peter; Grundel, Sara; Himpe, Christian; Klaassen, Bernhard; Küsters, Ferdinand; Marheineke, Nicole; Nikitina, Lialia; Nikitin, Igor; Pade, Jonas; Stahl, Nadine; Strohm, Christian; Tischendorf, Caren; Wirsen, Andreas	Aufsatz in Buch Book Article
2021	Statistical and Principal Component Analysis in the Design of Alkaline Methanol Fuel Cells Clees, Tanja; Klaassen, Bernhard; Nikitin, Igor; Nikitina, Lialia; Pott, Sabine	Konferenzbeitrag Conference Paper
2021	Efficient method for simulation of long-distance gas transport networks with large amounts of hydrogen injection Clees, Tanja; Baldin, Anton; Klaassen, Bernhard; Nikitina, Lialia; Nikitin, Igor; Spelten, Philipp	Zeitschriftenaufsatz Journal Article
2021	Graph representations in genetic programming Dal Piccol Sotto, Léo Francoso; Kaufmann, Paul; Atkinson, Timothy; Kalkreuth, Roman; Basgalupp, Márcio Porto	Zeitschriftenaufsatz Journal Article
2021	Comparison and Evaluation of Network Representation Learning Methods for Adverse Drug Reaction Prediction in a Heterogeneous Graph Delong, Lauren Nicole	Master Thesis
2021	Fault Detection in Uni-Directional Tape Production Using Image Processing Devagekar, S.; Delforouzi, A.; Plöger, P.G.	Konferenzbeitrag Conference Paper
2021	Image Based Quality Control in Thermoplastic Composite. Production using Deep Transfer Learning Devagekar, Somesh	Master Thesis
2021	COVID-19 Knowledge Graph: A computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology Domingo-Fernández, Daniel; Baksi, Shounak; Schultz, Bruce; Gadiya, Yojana; Kark, Reagon; Raschka, Tamara; Ebeling, Christian; Hofmann-Apitius, Martin; Kodamullil, Alpha Tom	Zeitschriftenaufsatz Journal Article
2021	An efficient approach towards the generation and analysis of interoperable clinical data in a knowledge graph Dörpinghaus, J.; Weil, V.; Schaaf, S.; Hübenthal, T.	Konferenzbeitrag Conference Paper
2021	Utilizing Minimum Set-Cover Structures with Several Constraints for Knowledge Discovery on Large Literature Databases Dörpinghaus, J.; Düing, C.; Weil, V.	Konferenzbeitrag Conference Paper
2021	Mechanism-based Stratification of Alzheimer's and Parkinson's Disease using Artificial Intelligence Emon, Mohammad Asif Emran Khan	Dissertation Doctoral Thesis
2021	Calibration of the Heston stochastic local volatility model: A finite volume scheme Engelmann, Bernd; Koster, Frank; Oeltz, Daniel	Zeitschriftenaufsatz Journal Article
2021	Large-scale investigation of transcriptomic signatures over multiple biological contexts Figueiredo, Rebeca	Master Thesis
2021	Towards a global investigation of transcriptomic signatures through co-expression networks and pathway knowledge for the identification of disease mechanisms Figueiredo, Rebeca Quiroz; Raschka, Tamara; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin; Mubeen, Sarah; Domingo-Fernández, Daniel	Zeitschriftenaufsatz Journal Article
2021	Automatic Fluid Edge Tracking in a Shaking Aquarium Firouzi, Payam	Master Thesis
2021	NFDI4Health - Nationale Forschungsdateninfrastruktur für personenbezogene Gesundheitsdaten Fluck, J.; Lindstädt, B.; Ahrens, W.; Beyan, O.; Buchner, B.; Darms, J.; Depping, R.; Dierkes, J.; Neuhausen, H.; Müller, W.; Zeeb, H.; Golebiewski, M.; Löffler, M.; Löbe, M.; Meineke, F.; Klammt, S.; Fröhlich, Holger; Hahn, H.; Schulze, M.; Pischon, T.; Nöthlings, U.; Sax, U.; Kusch, H.; Grabenhenrich, L.; Schmidt, C.O.; Waltemath, D.; Semler, S.; Gehrke, J.; Kirsten, T.; Praßer, F.; Thun, S.; Wieler, L.; Pigeot, I.	Zeitschriftenaufsatz Journal Article
2021	Knowledge-based adaptation of product and process design in blisk manufacturing Ganser, P.; Landwehr, M.; Schiller, S.; Vahl, C.; Mayer, S.; Bergs, T.	Konferenzbeitrag Conference Paper
2021	A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer's Disease Golriz Khatami, Sepehr; Domingo-Fernandez, D.; Mubeen, S.; Hoyt, C.T.; Robinson, C.; Karki, R.; Iyappan, A.; Kodamullil, A.T.; Hofmann-Apitius, M.	Zeitschriftenaufsatz Journal Article
2021	Caution, "normal" BMI: Health risks associated with potentially masked individual underweight - EPMA Position Paper 2021 Golubnitschaja, Olga; Liskova, A.; Koklesova, L.; Samec, M.; Biringer, K.; Büsselberg, D.; Podbielska, H.; Kunin, A.A.; Evsevyeva, M.E.; Shapira, N.; Paul, F.; Erb, C.; Dietrich, D.E.; Felbel, D.; Karabatsiakis, A.; Bubnov, R.; Polivka, J.; Polivka, J.; Birkenbihl, Colin; Fröhlich, Holger; Hofmann-Apitius, M.; Kubatka, P.	Zeitschriftenaufsatz Journal Article
2021	Generalized Sparse Grid Interpolation Based on the Fast Discrete Fourier Transform Griebel, Michael; Hamaekers, Jan	Konferenzbeitrag Conference Paper
2021	Investigation of Crystallization and Relaxation Effects in Coarse-Grained Polyethylene Systems after Uniaxial Stretching Grommes, Dirk; Schenk, Martin R.; Bruch, Olaf; Reith, Dirk	Zeitschriftenaufsatz Journal Article
2021	VMAP enabling interoperability in integrated CAE simulation workflows Gulati, Priyanka; Wolf, Klaus; Oeckerath, Andre	Konferenzbeitrag Conference Paper
2021	Converting disease maps into heavyweight ontologies: General methodology and application to Alzheimer's disease Henry, V.; Moszer, I.; Dameron, O.; Vila Xicota, L.; Dubois, B.; Potier, M.-C.; Hofmann-Apitius, M.; Colliot, O.	Zeitschriftenaufsatz Journal Article
2021	Abgleich von Experiment und Simulation eines Lamellenventils bezüglich der Fluid-Struktur-Interaktion Hentschel, Andreas	Master Thesis
2021	Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational-Experimental Approach Hopp, Marie-Thérèse; Domingo-Fernández, Daniel; Gadiya, Yojana; Detzel, Milena; Graf, Regina; Schmalohr, Benjamin; Imhof, Diana; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin	Zeitschriftenaufsatz Journal Article
2021	Towards realizing the vision of precision medicine: AI based prediction of clinical drug response Jong, Johann de; Cutcutache, Ioana; Page, Matthew; Elmoufti, Sami; Dilley, Cynthia; Fröhlich, Holger; Armstrong, Martin	Zeitschriftenaufsatz Journal Article
2021	Bridging between data and knowledge: New ways to better understand Alzheimer's Disease and Type 2 Diabetes comorbidity Karki, Reagon	Dissertation Doctoral Thesis
2021	Using predictive machine learning models for drug response simulation by calibrating patient-specific pathway signatures Khatami, Sepehr Golriz; Mubeen, Sarah; Bharadhwaj, Vinay; Kodamullil, Alpha; Hofmann-Apitius, Martin; Domingo-Fernández, Daniel	Zeitschriftenaufsatz Journal Article
2021	Is the Spiral Effect Psychological? Klaassen, Bernhard	Paper
2021	Inlinetauglichkeit von zerstörungsfreien Prüfmethoden für den digitalen Zwilling von thermoplastischen Carbonfaser-Tapes Koster, Dirk; Summa, Jannik; Jungmann, Christian; Rabe, Ute; Herrmann, Hans-Georg; Link, Tobias; John, Marianne; Nagel, Frank; Schlimper, Ralf; Delforouzi, Ahmad; Roggenbuck, Josef; Wolf, Klaus	Konferenzbeitrag Conference Paper
2021	Evaluation of a Hybrid AI Strategy for Modeling and Predicting Disease Outcome of Pneumonia in ICU Patients Ku, Cindy	Master Thesis
2021	COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints Langnickel, L.; Baum, R.; Darms, J.; Madan, S.; Fluck, J.	Konferenzbeitrag Conference Paper
2021	Information extraction from german clinical care documents in context of Alzheimer's disease Langnickel, Lisa; Krockauer, Kilian; Uebachs, Mischa; Schaaf, Sebastian; Madan, Sumit; Klockgether, Thomas; Fluck, Juliane	Zeitschriftenaufsatz Journal Article
2021	An Explainable Multimodal Neural Network Architecture for Predicting Epilepsy Comorbidities Based on Administrative Claims Data Linden, Thoma; Jong, J. de; Lu, C.; Kiri, V.; Haeffs, K.; Fröhlich, H.	Zeitschriftenaufsatz Journal Article
2021	Machine Learning Based Prediction of COVID-19 Mortality Suggests Repositioning of Anticancer Drug for Treating Severe Cases Linden, Thomas; Hanses, Frank; Domingo-Fernández, Daniel; DeLong, Lauren Nicole; Kodamullil, Alpha Tom; Schneider, Jochen; Vehreschild, Maria J.G.T.; Lanznaster, Julia; Ruethrich, Maria Madeleine; Borgmann, Stefan; Hower, Martin; Wille, Kai; Feldt, Torsten; Rieg, Siegbert; Hertenstein, Bernd; Wyen, Christoph; Roemmele, Christoph; Vehreschild, Jörg Janne; Jakob, Carolin E. M.; Stecher, Melanie; Kuzikov, Maria; Zaliani, Andrea; Fröhlich, Holger	Zeitschriftenaufsatz Journal Article
2021	Data Science Approaches for Identification of Genetic Impact on Cholesterol Levels in Parkinson’s Disease Lordick, Thomas	Master Thesis
2021	MultiPaths. A python framework for analyzing multi-layer biological networks using diffusion algorithms Marín-Llaó, Josep; Mubeen, Sarah; Perera-Lluna, Alexandre; Hofmann-Apitius, Martin; Picart-Armada, Sergio; Domingo-Fernández, Daniel	Zeitschriftenaufsatz Journal Article
2021	Entropy Numbers of Finite Dimensional Mixed-Norm Balls and Function Space Embeddings with Small Mixed Smoothness Mayer, S.; Ullrich, T.	Zeitschriftenaufsatz Journal Article
2021	A digital twin for lightweight thermoplastic composite part production Meyer, Morten-Christian; Delforouzi, Ahmad; Schlimper, Ralf; John, Marianne; Link, Tobias; Koster, Dirk; Summa, Jannik; Krauß, Constantin	Konferenzbeitrag Conference Paper
2021	DecoPath: A web application for decoding pathway enrichment analysis Mubeen, Sarah; Bharadhwaj, Vinay; Gadiya, Yojana; Hofmann-Apitius, Martin; Kodamullil, Alpha; Domingo-Fernández, Daniel	Zeitschriftenaufsatz Journal Article
2021	Remote monitoring technologies in Alzheimer's disease: Design of the RADAR-AD study Muurling, M.; Boer, C. de; Kozak, R.; Religa, D.; Koychev, I.; Verheij, H.; Nies, V.J.M.; Duyndam, A.; Sood, M.; Fröhlich, H.; Hannesdottir, K.; Erdemli, G.; Lucivero, F.; Lancaster, C.; Hinds, C.; Stravopoulos, T.G.; Nikolopoulos, S.; Kompatsiaris, I.; Manyakov, N.V.; Owens, A.P.; Narayan, V.A.; Aarsland, D.; Visser, P.J.	Zeitschriftenaufsatz Journal Article
2021	SEEDS: Data driven inference of structural model errors and unknown inputs for dynamic systems biology Newmiwaka, Tobias; Engelhardt, Benjamin; Wendland, Philipp; Kahl, Dominik; Fröhlich, Holger; Kschischo, Maik	Zeitschriftenaufsatz Journal Article
2021	Mathematical modeling and visualization of topologically non-trivial solutions in general relativity Nikitin, I.	Konferenzbeitrag Conference Paper
2021	On dark stars, galactic rotation curves and fast radio bursts Nikitin, I.	Konferenzbeitrag Conference Paper
2021	CADA: phenotype-driven gene prioritization based on a case-enriched knowledge graph Peng, Chengyao; Dieck, Simon; Schmid, Alexander; Ahmad, Ashar; Knaus, Alexej; Wenzel, Maren; Mehnert, Laura; Zirn, Birgit; Haack, Tobias; Ossowski, Stephan; Wagner, Matias; Brunet, Theresa; Ehmke, Nadja; Danyel, Magdalena; Rosnev, Stanislav; Kamphans, Tom; Nadav, Guy; Fleischer, Nicole; Fröhlich, Holger; Krawitz, Peter	Zeitschriftenaufsatz Journal Article
2021	Development of a Crowd Sourcing-Based Web Interface to Acquire Semantic Annotations in the Biomedical Domain Podorskaja, Daria	Master Thesis
2021	Konzeptfindung und Untersuchung der Anwendung neuronaler Netze zur Modellreduktion am Beispiel eines hydraulischen Kupplungsaktivierungssystems Riske, Manuel	Master Thesis
2021	3D-Printed Replica and Porcine Explants for Pre-Clinical Optimization of Endoscopic Tumor Treatment by Magnetic Targeting Roeth, Anjali A.; Garretson, Ian; Beltz, Maja; Herbold, Till; Schulze-Hagen, Maximilian; Quaisser, Sebastian; Georgens, Alex; Reith, Dirk; Slabu, Ioana; Klink, Christian D.; Neumann, Ulf P.; Linke, Barbara S.	Zeitschriftenaufsatz Journal Article
2021	Landscaping of COVID-19 Data for the Discovery of Insightful Patterns on Ethnicities - An Attempt Ruppa Surulinathan, Ram Kumar	Master Thesis
2021	Modellierung und Simulation eines Blockheizkraftwerkes mit seinen einzelnen Komponenten in Matlab/Simulink mit anschließender Validierung durch reale Testfälle Schiffer, Barbara	Master Thesis
2021	COVID-19-Forschungsdaten leichter zugänglich machen - Aufbau einer bundesweiten Informationsinfrastruktur Schmidt, C.O.; Fluck, J.; Golebiewski, M.; Grabenhenrich, L.; Hahn, H.; Kirsten, T.; Klammt, S.; Löbe, M.; Sax, U.; Thun, S.; Pigeot, I.	Zeitschriftenaufsatz Journal Article
2021	A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization Schultz, Bruce; Zaliani, Andrea; Ebeling, Christian; Reinshagen, Jeanette; Bojkova, Denisa; Lage-Rupprecht, Vanessa; Karki, Reagon; Lukassen, Sören; Gadiya, Yojana; Ravindra, Neal G.; Das, Sayoni; Baksi, Shounak; Domingo Fernández, Daniel; Lentzen, Manuel; Strivens, Mark; Raschka, Tamara; Cinatl, Jindrich; DeLong, Lauren; Gribbon, Philip; Geisslinger, Gerd; Ciesek, Sandra; Dijk, Daniel van; Gardner, Steve; Tom Kodamullil, Alpha; Fröhlich, Holger; Peitsch, Manuel; Jacobs, Marc; Hoeng, Julia; Eils, Roland; Claussen, Carsten; Hofmann-Apitius, Martin	Zeitschriftenaufsatz Journal Article
2021	Identifying multimodal signatures underlying the somatic comorbidity of psychosis: The COMMITMENT roadmap Schwarz, Emanuel; Alnæs, Dag; Andreassen, Ole A.; Cao, Han; Chen, Junfang; Degenhardt, Franziska; Doncevic, Daria; Dwyer, Dominic; Eils, Roland; Erdmann, Jeanette; Herrmann, Carl; Hofmann-Apitius, Martin; Kaufmann, Tobias; Koutsouleris, Nikolaos; Kodamullil, Alpha Tom; Khuntia, Adyasha; Mucha, Sören; Nöthen, Markus M.; Paul, Riya; Pedersen, Mads L.; Quintero, Andres; Schunkert, Heribert; Sharma, Ashwini; Tost, Heike; Westlye, Lars T.; Zhang, Youcheng; Meyer-Lindenberg, Andreas	Editorial
2021	Solving Second-Order Differential Equations by Decomposition Schwarz, Fritz	Aufsatz in Buch Book Article
2021	Evaluating digital device technology in Alzheimer’s disease via artificial intelligence Sood, Meemansa; Harms, Robert; Bügler, Maximilian; Tarnanas, Ioannis; Coello, Neva; Fröhlich, Holger	Zeitschriftenaufsatz Journal Article
2021	Bridging the Gap Between Product and Simulation Data Management Spelten, Philipp Christoph	Bachelor Thesis
2021	Bridging Scales in Alzheimer's Disease: Biological Framework for Brain Simulation With The Virtual Brain Stefanovski, L.; Meier, J.M.; Pai, R.K.; Triebkorn, P.; Lett, T.; Martin, L.; Bülau, K.; Hofmann-Apitius, M.; Solodkin, A.; McIntosh, A.R.; Ritter, P.	Review
2021	Zerstörungsfreie Prüfmethoden zur Merkmalsextraktion für den digitalen Zwilling der Thermoplast-Composite Wertschöpfungskette Summa, Jannik; Rabe, Ute; Pudovikov, Sergey; Jungmann, Christian; Koster, Dirk; Herrmann, Hans-Georg; Link, Tobias; John, Marianne; Nagel, Frank; Schlimper, Ralf; Delforouzi, Ahmad; Roggenbuck, Josef; Wolf, Klaus	Konferenzbeitrag Conference Paper
2021	Pure Functions in C: A Small Keyword for Automatic Parallelization Süß, T.; Nagel, L.; Vef, M.-A.; Brinkmann, A.; Feld, D.; Soddemann, T.	Zeitschriftenaufsatz Journal Article
2021	Variant Approach for Identifying Spurious Relations that Deep Learning Models Learn Tesch, Tobias; Kollert, Stefan; Garcke, Jochen	Zeitschriftenaufsatz Journal Article
2021	Modelling and Analysis of Automobile Simulations using Knowledge Graphs Thakur, Shramana	Master Thesis
2021	Cubature rules for weakly and fully compressible off-lattice Boltzmann methods Wilde, D.; Krämer, A.; Bedrunka, M.; Reith, Dirk; Foysi, H.	Zeitschriftenaufsatz Journal Article
2021	High-order semi-Lagrangian kinetic scheme for compressible turbulence Wilde, D.; Krämer, A.; Reith, Dirk; Foysi, H.	Zeitschriftenaufsatz Journal Article
2021	Deletion of Alzheimer's disease-associated CD33 results in an inflammatory human microglia phenotype Wißfeld, Jannis; Nozaki, Ichiro; Mathews, Mona; Raschka, Tamara; Ebeling, Christian; Hornung, Veit; Brüstle, Oliver; Neumann, Harald	Zeitschriftenaufsatz Journal Article
2021	VMAP enabling interoperability in integrated CAE simulation workflows Wolf, Klaus	Konferenzbeitrag Conference Paper
2021	VMAP Standard and the VMAP Standards Community e.V. Wolf, Klaus	Konferenzbeitrag Conference Paper
2021	Adaptive wavelet pooling for convolutional neural networks Wolter, Moritz; Garcke, Jochen	Konferenzbeitrag Conference Paper
2021	Frequency Domain Methods in Recurrent Neural Networks for Sequential Data Processing Wolter, Moritz	Dissertation Doctoral Thesis
2021	Transfer learning on clinical Alzheimer’s disease cohort data Yalchyk, Ilya	Master Thesis
2021	Sparse Grids and Applications - Munich 2018	Tagungsband Conference Proceeding

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