Fraunhofer-Institut für Algorithmen und Wissenschaftliches Rechnen SCAI| Jahr Year | Titel/Autor:in Title/Author | Publikationstyp Publication Type |
|---|---|---|
| 2020 | Machine Learning Classification of Heterogeneous Alzheimer's Disease Cohorts for Prioritization of Functional Domains Aborageh, Mohamed |
Master Thesis |
| 2020 | AErOmAt Abschlussbericht Asteroth, Alexander; Gaier, Adam; Hagg, Alexander; Meng, Jakob; Priesnitz, Andreas; Prochnau, Lea; Reith, Dirk |
Bericht Report |
| 2020 | Topological Reduction of Stationary Network Problems: Example of Gas Transport Baldin, Anton; Clees, Tanja; Klaassen, Bernhard; Nikitin, Igor; Nikitina, Lialia |
Zeitschriftenaufsatz Journal Article |
| 2020 | Quantum Machine Learning. Eine Analyse zu Kompetenz, Forschung und Anwendung Bauckhage, Christian; Brito, Eduardo; Daase, Inga; Franken, Lukas; Georgiev, Bogdan; Hecker, Dirk; Paschke, Adrian; Piatkowski, Nico; Soddemann, Thomas; Trabold, Daniel |
Studie Study |
| 2020 | Application cases of biological transformation in manufacturing technology Bergs, T.; Schwaneberg, U.; Barth, S.; Hermann, L.; Grunwald, T.; Mayer, S.; Biermann, F.; Sözer, N. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Differences in cohort study data affect external validation of artificial intelligence models for predictive diagnostics of dementia - lessons for translation into clinical practice Birkenbihl, Colin; Emon, Mohammad Asif; Vrooman, Henri; Westwood, Sarah; Lovestone, Simon; Hofmann-Apitius, Martin; Fröhlich, Holger |
Zeitschriftenaufsatz Journal Article |
| 2020 | Evaluating the Alzheimer's disease data landscape Birkenbihl, Colin; Salimi, Yasamin; Domingo-Fernandez, Daniel; Lovestone, Simon; Fröhlich, Holger; Hofmann-Apitius, Martin |
Zeitschriftenaufsatz Journal Article |
| 2020 | Multicenter Alzheimer's and Parkinson's disease immune biomarker verification study Brosseron, Frederic; Kolbe, Carl-Christian; Santarelli, Francesco; Carvalho, Stephanie; Antonell, Anna; Castro-Gomez, Sergio; Tacik, Pawel; Namasivayam, Aishwarya Alex; Mangone, Graziella; Schneider, Reinhard; Latz, Eicke; Wüllner, Ullrich; Svenningsson, Per; Sánchez-Valle, Raquel; Molinuevo, José Luis; Corvol, Jean-Christophe; Heneka, Michael T.; Hofmann-Apitius, Martin; Springstubbe, Stephan; Fröhlich, Holger; et al. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Editorial: Tailor-made approaches on use of multiscale modeling for research on soft materials - capabilities, restrictions and future possibilities Carbone, Paula; Faller, Roland; Qian, Hu-Jun; Reith, Dirk |
Editorial |
| 2020 | A note on £2p-completeness of a robust binary linear program with binary uncertainty set Claus, M.; Simmoteit, M. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Parameter Identification and Model Reduction in the Design of Alkaline Methanol Fuel Cells Clees, Tanja; Klaassen, Bernhard; Nikitin, Igor; Nikitina, Lialia; Pott, Sabine; Krewer, Ulrike; Haisch, Theresa; Kubannek, Fabian |
Zeitschriftenaufsatz Journal Article |
| 2020 | Mathematical Modeling of Alkaline Methanol Oxidation for Design of Efficient Fuel Cells Clees, Tanja; Nikitin, Igor; Nikitina, Lialia; Pott, Sabine; Krewer, Ulrike; Haisch, Theresa |
Konferenzbeitrag Conference Paper |
| 2020 | The recovery of ridge functions on the hypercube suffers from the curse of dimensionality Doerr, B.; Mayer, S. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Optimization of Retrieval Algorithms on Large Scale Knowledge Graphs Dörpinghaus, J.; Stefan, A. |
Konferenzbeitrag Conference Paper |
| 2020 | Knowledge Detection and Discovery using Semantic Graph Embeddings on Large Knowledge Graphs generated on Text Mining Results Dörpinghaus, J.; Jacobs, M. |
Konferenzbeitrag Conference Paper |
| 2020 | Solving sorting of rolling stock problems utilizing pseudochain structures in graphs Dörpinghaus, J.; Schrader, R. |
Konferenzbeitrag Conference Paper |
| 2020 | Java für die Life Sciences. Eine Einführung in die angewandte Bioinformatik Dörpinghaus, Jens; Schaaf, Sebastian; Weil, Vera |
Buch Book |
| 2020 | Towards context in large scale biomedical knowledge graphs Dörpinghaus, Jens; Stefan, Andreas; Schultz, Bruce; Jacobs, Marc |
Paper |
| 2020 | Generalization of algebraic multiscale to algebraic multigrid Ehrmann, Silvia; Gries, Sebastian; Schweitzer, Marc Alexander |
Zeitschriftenaufsatz Journal Article |
| 2020 | Clustering of Alzheimer's and Parkinson's disease based on genetic burden of shared molecular mechanisms Emon, Mohammad Asif; Heinson, Ashley; Wu, Ping; Domingo-Fernández, Daniel; Sood, Meemansa; Vrooman, Henri; Corvol, Christophe; Scordis, Phil; Hofmann-Apitius, Martin; Fröhlich, Holger |
Zeitschriftenaufsatz Journal Article |
| 2020 | PS4DR: A multimodal workflow for identification and prioritization of drugs based on pathway signatures Emon, Mohammad Asif; Domingo-Fernandez, Daniel; Tapley Hoyt, Charles; Hofmann-Apitius, Martin |
Zeitschriftenaufsatz Journal Article |
| 2020 | Coupling Qualitative Knowledge Graphs, Quantitative Systems Simulation, and Scienti c Machine Learning for In-Silico Pathology Intervention Predictions (QSEPs) English, Bradley |
Master Thesis |
| 2020 | Comprehensive analysis of tumor necrosis factor receptor TNFRSF9 (4-1BB) DNA methylation with regard to molecular and clinicopathological features, immune infiltrates, and response prediction to immunotherapy in melanoma Fröhlich, A.; Loick, S.; Bawden, E.G.; Fietz, S.; Dietrich, J.; Diekmann, E.; Saavedra, G.; Fröhlich, H.; Niebel, D.; Sirokay, J.; Zarbl, R.; Gielen, G.H.; Kristiansen, G.; Bootz, F.; Landsberg, J.; Dietrich, D. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Simplex stochastic collocation for piecewise smooth functions with kinks Fuchs, Barbara; Garcke, Jochen |
Zeitschriftenaufsatz Journal Article |
| 2020 | Mining of Clinical Case Reports with NLP and Deep Neural Networks Gadiya, Yojana |
Master Thesis |
| 2020 | Optimal multiparametric set-up modelled for best survival outcomes in palliative treatment of liver malignancies Goldstein, Elisha; Yeghiazaryan, Kristina; Ahmad, Ashar; Giordano, Frank A.; Fröhlich, Holger; Golubnitschaja, Olga |
Zeitschriftenaufsatz Journal Article |
| 2020 | Data science in neurodegenerative disease Golriz Khatami, Sepehr; Mubeen, S.; Hofmann-Apitius, Martin |
Zeitschriftenaufsatz Journal Article |
| 2020 | Challenges of Integrative Disease Modeling in Alzheimer's Disease Golriz Khatami, Sepehr; Robinson, C.; Birkenbihl, C.; Domingo-Fernandez, D.; Hoyt, C.T.; Hofmann-Apitius, M. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Variational Autoencoder Modular Bayesian Networks for Simulation of Heterogeneous Clinical Study Data Gootjes-Dreesbach, Luise; Sood, Meemansa; Sahay, Akrishta; Hofmann-Apitius, Martin; Fröhlich, Holger |
Zeitschriftenaufsatz Journal Article |
| 2020 | Stochastic subspace correction methods and fault tolerance Griebel, M.; Oswald, P. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Algebraic Wavefront Parallelization for ILU(0) Smoothing in Reservoir Simulation Gries, Sebastian |
Konferenzbeitrag Conference Paper |
| 2020 | Determination of relevant mechanical properties for the production process of polyethylene by using mesoscale molecular simulation techniques Grommes, D.; Reith, Dirk |
Zeitschriftenaufsatz Journal Article |
| 2020 | Analysis and Prediction of Deforming 3D Shapes using Oriented Bounding Boxes and LSTM Autoencoders Hahner, Sara; Iza-Teran, Rodrigo; Garcke, Jochen |
Konferenzbeitrag Conference Paper |
| 2020 | The origin of the hysteresis in cyclic voltammetric response of alkaline methanol electrooxidation Haisch, Theresa; Kubannek, Fabian; Nikitina, Lialia; Nikitin, Igor; Pott, Sabine; Clees, Tanja; Krewer, Ulrike |
Zeitschriftenaufsatz Journal Article |
| 2020 | A Computational Approach for Mapping Heme Biology in the Context of Hemolytic Disorders Humayun, Farah; Domingo-Fernández, Daniel; Abisheck Paul George, Ajay; Hopp, Marie-Thérèse; Syllwasschy, Benjamin; Detzel, Milena; Tapley Hoyt, Charles; Hofmann-Apitius, Martin; Imhof, Diana |
Zeitschriftenaufsatz Journal Article |
| 2020 | Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer's Disease Karki, Reagon; Madan, Sumit; Gadiya, Yojana; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom; Hofmann-Apitius, Martin |
Zeitschriftenaufsatz Journal Article |
| 2020 | What identifies a whale by its fluke? On the benefit of interpretable machine learning for whale identification Kierdorf, J.; Garcke, J.; Behley, J.; Cheeseman, T.; Roscher, R. |
Konferenzbeitrag Conference Paper |
| 2020 | The performance of Dunning, Jensen, and Karlsruhe basis sets on computing relative energies and geometries Kirschner, Karl N.; Heiden, Wolfgang; Reith, Dirk |
Zeitschriftenaufsatz Journal Article |
| 2020 | Automatic analysis of crash simulations with dimensionality reduction algorithms such as PCA and t-SNE Kracker, David; Garcke, Jochen; Schumacher, Axel; Schwanitz, P. |
Konferenzbeitrag Conference Paper |
| 2020 | Drug Repositioning using Relational Graph Convolutional Neural Networks on a Heterogeneous Knowledge Graph Krix, Sophia |
Master Thesis |
| 2020 | Lattice Boltzmann simulations on irregular grids Krämer, Andreas; Wilde, Dominik; Küllmer, Knut; Reith, Dirk; Foysi, Holger; Joppich, Wolfgang |
Zeitschriftenaufsatz Journal Article |
| 2020 | Voice perturbations under the stress overload in young individuals: Phenotyping and suboptimal health as predictors for cascading pathologies Kunin, Anatolij; Sargheini, Nafiseh; Birkenbihl, Colin; Moiseeva, Natalia; Fröhlich, Holger; Golubnitschaja, Olga |
Zeitschriftenaufsatz Journal Article |
| 2020 | Presynaptic NMDARs cooperate with local spikes toward GABA release from the reciprocal olfactory bulb granule cell spine Lage-Rupprecht, V.; Zhou, L.; Bianchini, G.; Aghvami, S.S.; Mueller, M.; Rozsa, B.; Sassoe-Pognetto, M.; Egger, V. |
Zeitschriftenaufsatz Journal Article |
| 2020 | The future of German MeSH: a new semi-automatic translation process and new services for search and annotation Langnickel, Lisa; Baum, Roman; Wollnik-Korn, Gabriele; Fischer-Wagener, Brigitte; Madan, Sumit; Fluck, Juliane |
Zeitschriftenaufsatz Journal Article |
| 2020 | PathME: Pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data Lemsara, Amina; Ouadfel, Salima; Fröhlich, Holger |
Zeitschriftenaufsatz Journal Article |
| 2020 | Systems Toxicology Approach for Testing Chemical Cardiotoxicity in Larval Zebrafish Li, Roman; Zupanic, Anze; Talikka, Marja; Belcastro, Vincenzo; Madan, Sumit; Dörpinghaus, Jens; Berg, Colette vom; Szostak, Justyna; Martin, Florian; Peitsch, Manuel C.; Hoeng, Julia |
Zeitschriftenaufsatz Journal Article |
| 2020 | CTO: A community-based clinical trial ontology and its applications in PubChemRDF and SCAIView Lin, A.Y.; Gebel, S.; Li, Q.L.; Madan, S.; Darms, J.; Bolton, E.; Smith, B.; Hofmann-Apitius, M.; He, Y.O.; Kodamullil, A.T. |
Konferenzbeitrag Conference Paper |
| 2020 | Algebraic multigrid for the finite pointset method Metsch, B.; Nick, F.; Kuhnert, J. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Proposal of an Architecture for Terminology Management in a Research Project Mora, Sara; Madan, Sumit; Gebel, Stephan; Giacomini, Mauro |
Konferenzbeitrag Conference Paper |
| 2020 | Corrigendum: The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling Mubeen, S.; Tapley Hoyt, C.; Gemünd, A.; Hofmann-Apitius, M.; Fröhlich, H.; Domingo-Fernandez, D. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Local Postsynaptic Signaling on Slow Time Scales in Reciprocal Olfactory Bulb Granule Cell Spines Matches Asynchronous Release Ona Jodar, T.; Lage-Rupprecht, V.; Abraham, N.M.; Rose, C.R.; Egger, V. |
Zeitschriftenaufsatz Journal Article |
| 2020 | SEAweb: The small RNA Expression Atlas web application Rahman, Raza-Ur; Liebhoff, Anna-Maria; Bansal, Vikas; Fiosins, Maksims; Rajput, Ashish; Sattar, Abdul; Magruder, Daniel S.; Madan, Sumit; Sun, Ting; Gautam, Abhivyakti; Heins, Sven; Liwinski, Timur; Bethune, Jörn; Trenkwalder, Claudia; Fluck, Juliane; Mollenhauer, Brit; Bonn, Stefan |
Zeitschriftenaufsatz Journal Article |
| 2020 | Drug repositioning of antiretroviral ritonavir for combinatorial therapy in glioblastoma Rauschenbach, Laurèl; Wieland, Anja; Reinartz, Roman; Kebir, Sied; Till, Andreas; Darkwah Oppong, Marvin; Dobersalske, Celia; Ullrich, Vivien; Ahmad, Ashar; Jabbarli, Ramazan; Pierscianek, Daniela; Fröhlich, Holger; Simon, Matthias; Brüstle, Oliver; Sure, Ulrich; Glas, Martin; Scheffler, Björn |
Zeitschriftenaufsatz Journal Article |
| 2020 | Exhaustive Search with MEDLINE on Knowledge Graphs for Correctness and Completeness Rayya, Noura |
Master Thesis |
| 2020 | Sustaining complex projects by linking in- and off-curriculum elements: The BRSU Racing Engineer Certificate Reith, Dirk; Blume, Christian; Grein, Martina; Haedecke, Tobias; Könemann, Daniel; Malschützky, Michael |
Konferenzbeitrag Conference Paper |
| 2020 | Drug2ways: Reasoning over causal paths in biological networks for drug discovery Rivas-Barragan, Daniel; Mubeen, Sarah; Guim Bernat, Francesc; Hofmann-Apitius, Martin; Domingo-Fernández, Daniel |
Zeitschriftenaufsatz Journal Article |
| 2020 | Explain it to me - facing remote sensing challenges in the bio- and geosciences with explainable machine learning Roscher, R.; Bohn, B.; Duarte, M.F.; Garcke, J. |
Konferenzbeitrag Conference Paper |
| 2020 | Explainable Machine Learning for Scientific Insights and Discoveries Roscher, Ribana; Bohn, Bastian; Duarte, Marco F.; Garcke, Jochen |
Zeitschriftenaufsatz Journal Article |
| 2020 | Combining Machine Learning and Simulation to a Hybrid Modelling Approach: Current and Future Directions Rüden, Laura von; Mayer, Sebastian; Sifa, Rafet; Bauckhage, Christian; Garcke, Jochen |
Konferenzbeitrag Conference Paper |
| 2020 | The COVID-19 Ontology Sargsyan, Astghik; Kodamullil, Alpha Tom; Baksi, Shounak; Darms, Johannes; Madan, Sumit; Gebel, Stephan; Keminer, Oliver; Jose, Geena Mariya; Balabin, Helena; DeLong, Lauren Nicole; Kohler, Manfred; Jacobs, Marc; Hofmann-Apitius, Martin |
Zeitschriftenaufsatz Journal Article |
| 2020 | A Compact Spectral Descriptor for Shape Deformations Sible, Skylar; Iza-Teran, Rodrigo; Garcke, Jochen; Aulig, Nikola; Wollstadt, Patricia |
Konferenzbeitrag Conference Paper |
| 2020 | Realistic simulation of virtual multi-scale, multi-modal patient trajectories using Bayesian networks and sparse auto-encoders Sood, M.; Sahay, A.; Karki, R.; Emon, M.A.; Vrooman, H.; Hofmann-Apitius, M.; Fröhlich, H. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Generative Methoden der Künstlichen Intelligenz zur Modellierung Multimodaler Longitudinaler Klinischer Studien und Generierung Virtueller Kohorten Wendland, Philipp Johannes |
Master Thesis |
| 2020 | Semi-Lagrangian lattice Boltzmann method for compressible flows Wilde, D.; Krämer, A.; Reith, Dirk; Foysi, H. |
Zeitschriftenaufsatz Journal Article |
| 2020 | Sequence Prediction Using Spectral RNNs Wolter, Moritz; Gall, Jürgen; Yao, Angela |
Konferenzbeitrag Conference Paper |
| 2020 | Neural Network Compression via Learnable Wavelet Transforms Wolter, Moritz; Lin, Shaohui; Yao, Angela |
Konferenzbeitrag Conference Paper |
| 2020 | A Landscape Analysis of Standardisation in the Field of Artificial Intelligence Ziegler, Wolfgang |
Zeitschriftenaufsatz Journal Article |
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